Product

Single-Microbe DNA Barcoding Kit high-quality microbial genome recovery at scale

Learn More
Discover

Single-Microbe DNA Barcoding Kit barcodes up to 10,000 microbial single amplified genomes (SAGs) per experiment, enabling genome recovery for individual cells after sequencing. Start by encapsulating microbial cells from suspension into semi-permeable capsules (SPCs), then seamlessly proceed with lysis, genome amplification, and barcoding. Optimized for Illumina short-read sequencing, the kit can also be adapted to any commercial NGS platform, including short- and long-read sequencing.

Features

HIGH THROUGHPUT
Up to 10,000 cells in a single experiment
RESOLUTION
Achieve strain-level taxonomic resolution
LINKAGE
Link individual genomes with extrachromosomal DNA
ASSEMBLY
Assemble single microbe genomes de novo
QUANTIFICATION
Quantify absolute microbial abundance
COST EFFICIENCY
Retrieve whole genomes for <1$ per cell (incl. sequencing)

Publications Using our Single-Microbe DNA Barcoding Kit

Kit components

Cell Lysis
  • 2x Lysis Buffer
  • Neutralization Buffer
Buffers
  • 50x Wash Buffer
  • 10x Stop Buffer
  • Water
Debranching & End Prep
  • Debranching Enzyme
  • 10x Debranching Buffer
  • End Prep Enzyme Mix
  • End Prep Reaction Buffer
Whole Genome Amplification
  • WGA Polymerase
  • WGA Enhancer
  • 10x WGA Reaction Buffer
  • dNTP Mix
  • Primer Mix
Barcoding
  • Ligation Enzyme
  • 10x Ligation Buffer
  • Barcodes Plates
  • Ligation Adapter
  • Indexing Primer Mix

Specifications

Catalog number CKP-BARK1
Sufficient for 3 runs x 10,000 barcoded microbial cells
Sample type Microbial cell suspension
For use with (equipment)
Sequencing Illumina MiSeq, NextSeq 550, NovaSeq
Shipping conditions Dry Ice
Storage -20 °C
Intended Use Research Use Only

SAMPLE TYPES

Designed for versatility, our technology seamlessly integrates with diverse microbiomes and isolates, provided that the cells are in aqueous suspension and free from large particulates (>40 μm).

Soil
Marine
Human
Isolates
Wastewater
Other
White paper: Sample preparation for single-microbe isolation in semi-permeable capsules
Read more

Lysis

SPCs can withstand harsh lysis conditions, which can be carried out in multiple steps. While the kit includes an alkaline lysis buffer, researchers have the flexibility to use their preferred lysis method, with the exception of mechanical disruption.

Chemical
Harsh detergents, Alkaline solutions
Enzymatic
Proteinase K, Lysozyme
Temperature
Up to 100℃
Selective Lysis
Compatible with commercial kits for host cell lysis
Mechanical
Not compatible with beat beating or other mechanical methods

MULTIPLEXING CAPABILITIES

Samples can be multiplexed at various stages of the workflow, maximizing efficiency.

Applications

Start by
Isolating Microbial Cells
in Semi-Permeable Capsules
Learn more

PROOF OF CONCEPT SEQUENCING SERVICE

Thinking about doing single-cell microbial genomics but not sure whether Single-Microbe DNA Barcoding kit will be a good fit?

Test your sample's full potential quickly and easily by sending it to us. The proof of concept experiment includes the following:

  • Sample preparation
  • Cell encapsulation into SPCs
  • Single-microbe DNA barcoding
  • Sequencing on the Illumina platform (NextSeq 550 or NovaSeq)
  • Data demultiplexing by cellular barcodes

ADVANCED DATA ANALYSIS

We've partnered with the Single Cell Genomics Center at Bigelow Laboratory to offer advanced bioinformatics services for microbiologists lacking data analysis resources

Learn more
Speak to you soon!
We’ve received Your contact information, and our expert is on the way getting back to You. Expect to hear from us soon!

Request additional information and pricing

This site is protected by reCAPTCHA and the Google Privacy Policy and Terms of Service apply.